Circulation. 1995;91:1641-1646
(Circulation. 1995;91:1641-1646.)
© 1995 American Heart Association, Inc.
Genetic Diagnosis With the Denaturing Gradient Gel Electrophoresis Technique Improves Diagnostic Precision in Familial Hypercholesterolemia
Henrik Nissen, MD;
Annebirthe Bo Hansen, MD;
Per Guldberg, MSc;
Niels Erik Petersen, MD;
Mogens Lytken Larsen, MD;
Torben Haghfelt, MD, DMSci;
Karsten Kristiansen, MSc;
Mogens Hørder, MD, DMSci
From the Department of Clinical Chemistry (H.N., A.B.H., N.E.P., M.H.)
and the Department of Cardiology (M.L.L., T.H.), Odense University Hospital;
the Department of Molecular Biology, Odense University (K.K.), Odense; and the
John F. Kennedy Institute (P.G.), Glostrup, Denmark.
Correspondence to Henrik Nissen, MD, Department of Clinical Chemistry,
Odense University Hospital, 5000 Odense C, Denmark.
 |
Abstract
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Background Familial hypercholesterolemia (FH) is an autosomal
dominant
inherited disorder of lipid metabolism caused by mutations in
the
LDL receptor gene. FH is characterized clinically by elevated
LDL
cholesterol level and premature coronary disease. Diagnosing
FH on
clinical grounds may be difficult, and previous genetic
methods are too
cumbersome for routine use except in the few
populations with
FH-founder mutations. A simple mutation screening
technique based on
denaturing gradient gel electrophoresis (DGGE)
has been highly useful
in detecting mutations in other genes,
and in the present study we
evaluated the diagnostic potential
of this method for the diagnosis of
FH.
Methods and Results Conditions for screening exon 3 of the LDL
receptor gene using the DGGE technique were established and 14 Danish
FH families were examined. An index patient from 1 family had an
abnormal DGGE pattern; consequently, an examination of exon 3 of the
LDL receptor gene in 21 members of this patient's family was done. The
DGGE pattern was seen only in patients with a definite clinical
diagnosis of FH. Subsequent sequencing of exon 3 of the LDL receptor
gene in these individuals revealed the presence of the French-Canadian
type 4 Trp66-Gly mutation. However, in 4 of 11 cases in
which a definite clinical diagnosis of FH had been made, the
inheritance of the French-Canadian type 4 mutation could be rejected on
the basis of genetic analysis.
Conclusions Introduction of a simple genetic analysis based
on DGGE may improve the precision of diagnosis in FH families.
Key Words: hypercholesterolemia diagnosis genes molecular biology arteriosclerosis
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Introduction
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Familial hypercholesterolemia (FH) is an
autosomal dominant
inherited disorder of lipid metabolism caused by
mutations in
the gene encoding the low-density lipoprotein (LDL)
receptor
(LDLR) that lead to elevated levels of LDL cholesterol in
plasma
and an increased risk of premature
atherosclerosis.
1 A prevalence
of FH of approximately 1 in
500 is estimated for most populations
in the Western
world.
1 In some populations, a few mutations
have been
enriched through founder effects: examples include
the
Finns,
2 Lebanese Christian Arabs,
3
French-Canadians,
4 and South African
Afrikaners,
5 but in general different families
are
expected to have different mutations. As recently reviewed
by Hobbs et
al,
6 the diversity of mutations is so great that
screening
for specific mutations in FH families, apart from
populations with
founder mutations, is not feasible. Because
larger LDLR gene
rearrangements detectable by Southern blotting
techniques account for
only 2% to 17% of FH families in the
populations
studied,
7 8 9 the majority of mutations
in the
LDLR gene are
probably point mutations or minor rearrangements
undetectable by
Southern blotting. The clinical expression of
the different LDLR
mutations varies,
10 11 and in FH families
there is a
significant overlap between cholesterol levels in
children with or
without FH.
12 Methods permitting early detection
of FH
gene carrier status will allow primary prevention to be
instituted at a
young age in children who have FH without the
risk of misclassification
of FH status. The difficulties in
securing accurate diagnosis in FH
families using traditional
clinical and biochemical diagnostic
criteria
13 indicate the
need for simple diagnostic tools
based on genetic analysis that
can also be used in populations
without FH founder mutations.
Because of the lack of mutational hot
spots in the LDLR gene,
simple methods of examining the entire coding
region of the
LDLR gene are needed. In phenylketonuria, another
autosomal
inherited disease with multiple underlying mutations and a
varying
phenotypic expression, more than 99% of the underlying
mutations
in the phenylalanine hydroxylase gene have been
detected
14 by use of guanine-cytosineclamped
(GC-clamped) denaturing
gradient gel electrophoresis
(DGGE).
15 We therefore decided
to use the DGGE
technique
16 to screen for the presence of mutations
in the
LDLR gene in 14 Danish FH families that have been followed
up with
clinical observations for several decades.
17 In screening
these
families for mutations in exon 3 of the LDL receptor, we detected
the
French-Canadian type 4 Trp
66-Gly mutation
4
in one family. A
young French-Canadian woman homozygous for this
particular mutation
has recently been the subject of the first
attempted gene therapy
for FH.
18 The mutation in the
Danish population, however, may
have arisen on a different genetic
background, because the haplotype
differs from the original
description.
4 The clinical picture
of the heterozygous
state of this mutation in a Danish family
and the contributions of
genetic analysis for improved diagnostic
accuracy in FH are
presented here.
 |
Methods
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Patients
We examined 14 families with FH who have been
followed up since
1969
at the Lipid Clinic of the Departments of Endocrinology and
Cardiology
at Odense University Hospital, Odense, Denmark. A total of
305
family members are registered; 222 are alive today. The diagnosis
of
FH in these families was based on (1) serum levels of total
cholesterol
or, if known, LDL cholesterol above the 95th percentile for
their
sex and age in the Danish population,
19 (2) a family
history
positive for hypercholesterolemia, and (3) the presence of
tendon
xanthomas in members of the family.
Blood Sampling and Lipid Analysis
After approval of the study
protocol by the regional ethical
committee on human research and after subjects' informed consent was
obtained, blood sampling for DNA isolation and lipid analysis was
performed in adults from the 14 families; in a few cases it was also
performed in children during routine blood sampling for hospital
admission. Subsamples of the children's blood samples were used for
this study after informed consent had been given by the parents. DNA
for genetic analysis was isolated from peripheral blood leukocytes
according to standard procedures.20 Lipid analysis was
performed after subjects had fasted overnight. Serum cholesterol, serum
HDL cholesterol, and serum triglyceride concentrations were measured
according to routine methods of the clinical laboratory. The
concentrations of LDL cholesterol were calculated using the Friedewald
formula21 when serum triglyceride level was
5 mmol/L. To
exclude causes of secondary hypercholesterolemia, levels of serum
creatinine, serum
-glutamyltransferase, serum thyroid-stimulating
hormone, and blood glucose were determined using standard techniques of
the clinical laboratory. For deceased individuals and individuals not
wishing to participate in blood sampling (pedigree identification
numbers I1, II1, II3, and III4), the biochemical values were obtained
from the medical records, if available.
Southern Blotting
The haplotype of the LDLR gene was
determined at three variable
restriction enzyme sites for BsmI, PstI, and
SpeI.22 DNA (6 µg) was digested with the
appropriate restriction enzymes under conditions recommended by the
manufacturer (Boehringer Mannheim). Digests were size fractionated by
gel electrophoresis through a 0.7% agarose gel. Southern blotting was
performed essentially as described by Rüdiger et
al.23 Two cDNA probes were used for hybridization: a
1.7-kilobase HindIII/BglII fragment containing
sequences from exon 1-11 and a 1.9-kilobase BamHI fragment
encompassing sequences from exon 11 to 18 of the cDNA clone pLDLR3
(American Type Culture Collection, product #57.004). Haplotypes were
constructed with the assumption that there had been no recombination
within the LDLR locus.
Polymerase Chain Reaction
A one-step polymerase chain
reaction (PCR) technique of
introducing a GC-clamp to the end of a PCR product was
used.15 The PCR primers had the following sequences:
5'-CGCCCGCCGCGCCCCGCGCCCGTCCCGCCGCCCCCGCCCGTCGGCCTCAGTGGGTCTTTC-3'
(primer A) and 5'-ACTCCCCAGGACTCAGATAGGC-3' (primer B). PCR
conditions
were as follows: 0.8 µmol/L of primer A; 0.8 µmol/L of primer B;
100 ng of genomic DNA; 10 mmol/L Tris HCl, pH 8.3; 1.5 mmol/L
MgCl2; 50 mmol/L KCl; 0.01% gelatin; 200 µmol/L of each
deoxyribonucleotide; and 1 U Thermus Aquaticus DNA polymerase
(Amplitaq, Perkin-Elmer-Cetus) in a volume of 50 µL. The thermal
cycling protocol was 95°C for 5 minutes, 94°C for 1 minute, and
68°C for 5 minutes for 40 cycles followed by a last step of 72°C
for 10 minutes before a denaturation/renaturation program of 99°C for
7 minutes, 65°C for 60 minutes, and 37°C for 60 minutes. The
protocol ended with cooling to 4°C. The expected length and purity of
the GC-clamped PCR products was verified by electrophoresis in a 3%
Nusieve gel (FMC).
DGGE and Sequencing
Linearly increasing denaturing gradient
polyacrylamide gels
(16x20x0.1 cm) of 20%-60% denaturant were made with a gradient gel
mixer (Hoeffer). Stock solutions in 0.04 mol/L Tris-acetate and 1
mmol/L EDTA, pH 8.0, of (1) 6% polyacrylamide without denaturant and
(2) 6% polyacrylamide with 80% denaturant (100% denaturant, 7 mol/L
urea and 40% formamide) were used. Aliquots of 12 µL of the
GC-clamped PCR products were loaded on the gels. Electrophoresis was
performed for 5 hours at 150 V in a buffer bath of 0.04 mol/L
Tris-acetate and 1 mmol/L EDTA, pH 8.0, heated to 60°C using a
modified PROTEAN II Slab electrophoresis cell (Bio-Rad) to ensure a
uniform temperature in the gels during the run. After electrophoresis,
gels were stained with ethidium bromide and photographed under
ultraviolet translumination.
Double-stranded DNA for sequencing was
made using PCR under the same
conditions as in the first round of PCR, except that primers A and B
were used in concentrations of 0.2 µmol/L, nucleotides were used in
concentrations of 20 µmol/L, and the number of cycles was reduced to
30. Direct sequencing of the PCR products was performed as
described24 using a 32Pend-labeled primer B
as the sequencing primer.
Melting Profile Calculations
The melting profile for the
GC-clamped DNA fragments covering
exon 3 of the LDLR gene was calculated using the computer algorithm
MELT87.25 With this program the theoretical
melting temperature of a DNA segment can be calculated. The specific
melting profile of a given DNA fragment is dependent on its composition
and nucleotide sequence. The higher the melting temperature, the longer
the DNA fragment will travel in a DGGE gel before it is halted by the
steric hindrance to further movement that is the result of the melting
process, during which the transition from a compact double-stranded
structure to a partly single-stranded structure takes place. The
melting profile of the GC-clamped PCR fragment containing exon 3 and
bordering intron sequences of the LDLR gene is shown in Fig 1
.

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Figure 1. Calculated melting profile of a 268base pair
polymerase chain reaction product covering LDL receptor exon 3 and the
adjoining intron 2 (55 base pairs) and intron 3 (50 base pairs)
sequences. The polymerase chain reaction product has a 40base pair
GC-sequence (GC-clamp) attached to the 5' end. The sequence between the
primers that is screened contains LDL receptor exon 3 and adjoining 35
base pairs of intron 2 and 28 base pairs of intron 3 (shown in
figure).
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Results
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In an ongoing study aimed at characterizing the mutational
spectrum
of the LDLR gene in the Danish population with FH, we applied
an
exon-screening technique based on DGGE to the study of the LDLR
gene
mutations in 14 Danish FH families. Detection of mutations
using DGGE
is based on the fact that a change in the base sequence
of a given DNA
fragment induces a change in its melting profile
and consequently
alters the electrophoretic characteristics
of the fragment in a
denaturing gradient gel compared with the
wild-type sequence.
We used a set of PCR primers that in a single PCR reaction amplified a
228base pair fragment of the LDLR gene covering the 123base pair
exon 3 sequences and adjoining 55 and 50base pair intron 2 and 3
sequences, and simultaneously introduced a 40base pair GC-clamp to
the 5' end of the PCR product. An artificial highmelting
temperature
domain was thereby created so that all of the exon 3 sequences were in
a single lowmelting temperature domain (Fig 1
), which
ensured maximum
sensitivity in detection of mutations in this sequence region.
When the DGGE technique was applied to the index patients of the
families, the denaturing gradient gel generally showed the single-band
pattern expected in individuals with two identical alleles. In one
index subject, however, the presence of a four-band pattern in the DGGE
gel indicated the existence of two different alleles in the exon 3
region of the LDLR gene, the lower set of bands being caused by the PCR
products from the two different alleles and the two upper bands being
caused by formation of heteroduplexes between the PCR products from the
two alleles. Consequently, DGGE screening of exon 3 of the LDLR gene in
another 20 members from the family of the index subject was performed.
Fig 2
shows the pedigree indicating which family members
have FH as established by clinical criteria, and Fig 3
shows the results of the DGGE screening of exon 3 of the LDLR gene in
this family. In another 6 family members the four-band pattern
identical to the one in the index subject, subject IV1, was seen.
Because all individuals with this pattern had a definite or strongly
suspected clinical diagnosis of FH, this finding indicated that the
DGGE pattern was caused by an underlying mutation in exon 3 of the LDLR
gene.

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Figure 2. Pedigree of the Danish kindred with the
French-Canadian type 4 mutation of the low-density lipoprotein receptor
gene with classification on clinical criteria. Squares indicate males;
circles, females; slashed symbols, deceased subjects; half-closed
symbol, individuals heterozygous for the French-Canadian type 4
mutation based on clinical criteria; and +, DNA analysis
performed.
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Figure 3. Denaturing gradient gel electrophoresis analysis
of DNA from 21 members of the Danish kindred with the French-Canadian
Trp66-Gly mutation of the low-density lipoprotein receptor
gene. The 6% polyacrylamide gel contains a denaturing gradient of 20%
to 60%. Pedigree identification numbers are with reference to Fig
2 .
The four-band pattern characterizing the presence of the
French-Canadian Trp66-Gly mutation is seen in subjects II4,
III5, III7, III9, IV1, IV7, and IV9.
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This region was therefore sequenced and a thymine-to-guanine
transversion was found that corresponded to the first position of codon
66 in the LDLR gene.26 This transversion results in an
amino acid change from tryptophan to glycine in the ligand-binding
region of the LDL receptor and is identical to the French-Canadian
Trp66-Gly mutation.4
By comparing the results of the genetic screening from Fig 3
with the
clinical data from Tables 1
and 2
and the
resultant pedigree in Fig 2
, we observed a discrepancy between
the
genetic and clinical diagnoses of FH in this family. Subjects II2,
III6, IV8, and IV11 all had LDL cholesterol levels above the 95th
percentile for their sex and age, and in subjects II2, III6, and IV8
this was also the case for total cholesterol levels. Secondary
hyperlipidemia could not be demonstrated in any of these patients.
After DGGE-based mutation screening, however, inheritance of the
French-Canadian type 4 mutation could be rejected, as illustrated in
Fig 3
.
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Table 1. Clinical Data for Subjects With a Clinical Diagnosis
of Familial Hypercholesterolemia in Four Generations of a Danish Family
With the French-Canadian Type 4 LDL Receptor Mutation
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Table 2. Clinical Data For Subjects Clinically Diagnosed as
Not Having Familial Hypercholesterolemia in Three Generations of a
Danish Family With the French-Canadian Type 4 LDL
Receptor Mutation
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In this FH family the Trp66-Gly LDLR gene mutation
cosegregated with the haplotype BsmI-, PstI-,
and SpeI+ (+ indicates the presence and - the absence
of a
cutting site). Of the 4 individuals with clinical FH but absence of the
French-Canadian Trp66-Gly mutation, SpeI- was
seen in subjects II2, III6, and IV8; however, SpeI+ was seen
in subject IV11. The absence of the mutation in this individual makes
it highly likely that the SpeI+ site was inherited from her
father, from whom blood samples could not be obtained.
Only one male subject with FH was more than 30 years old at the time of
data collection, and he had already suffered his first myocardial
infarction at the age of 38 years. Genetic testing was not performed in
this patient, but because his daughter has the mutation it must have
been inherited from him. All women in this study more than 55 years old
who had definite FH had already had their first myocardial infarction.
Thus, the high risk of cardiovascular disease caused by the
French-Canadian Trp66-Gly LDLR gene mutation in this family
is clearly demonstrated.
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Discussion
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To date, more than 150 different mutations in the LDLR gene
have
been described,
6 and in most populations different
families
can be expected to have different mutations. After the cloning
of
the human LDLR by Yamamoto et al
26 in 1984, most of the
LDLR
gene mutations described during the first years were larger
gene
rearrangements detectable by the Southern blotting
technique.
27 However, in recent years the development of
the PCR technique
28 has allowed the design of a range of
different mutation screening
techniques
29 30 that
detect
minor gene rearrangements and point
mutations with high sensitivities.
In our laboratory we use
the GC-clamped DGGE technique
15
for screening splice sites
and exons of the LDLR gene for mutations in
a Danish FH population.
Using this DGGE technique, we analyzed exon 3 in a Danish FH family and
found the French-Canadian Trp66-Gly mutation in codon 66 of
the LDLR gene,4 which results in a tryptophan-to-glycine
amino acid change in the ligand-binding domain of the LDLR protein.
This is the first description of this mutation in a non-Canadian
population. The mutation does not occur at a CpG dimer hot spot for
point mutations.31 Haplotype analysis in the Danish
family revealed the haplotype BsmI-, PstI-, and
SpeI+, which is different from that in the French-Canadian
FH population,4 in whom the mutation cosegregates with
BsmI+, PstI-, and SpeI+. The
difference indicates that perhaps the mutation detected in the two
populations cannot be traced to a common ancestor but may have arisen
in each population independently.
Detailed information of the clinical picture of heterozygotes for the
French-Canadian Trp66-Gly LDLR gene mutation has not, to
our knowledge, been presented, and analysis of the
environmental effect on a common mutation in Danish and French-Canadian
FH patients is therefore not possible. Moorjani et al11
have, however, reported a mean cholesterol level in 20 children
heterozygous for the French-Canadian Trp66-Gly FH mutation
of 7.2 mmol/L, compared with a mean of 8.3 mmol/L in the 2 patients
less than 18 years old in the Danish family. Thus, the cholesterol
levels seems to be at least within the same range.
Hypercholesterolemia is a multifactorial condition; it has been
estimated that FH is the causative factor in only 5% of persons with
the type II lipoprotein pattern.1 In accordance with
findings from examination of Finnish FH families,32 the
multifactorial etiology of hypercholesterolemia is likely to blur the
clinical diagnosis in some FH families, as demonstrated in this paper.
We found that as many as 4 of 21 persons in the family we examined were
misclassified as having FH when traditional clinical criteria were used
to make the diagnosis, thus documenting the improved diagnostic
precision obtained by introducing genetic diagnosis in FH families.
According to the probability assessments of Williams et
al33 for diagnosing FH in FH families, subjects II2, III6,
IV8, and IV11 have probabilities of 79.7%, 99.8%, 97.1%, and 97.1%,
respectively, for having FH when total cholesterol levels were used and
90.0%, 99.3%, 97.1%, and 48.1%, respectively, when LDL cholesterol
levels were used (lipid values for the population less than 18 years
old were reference values for subject IV8). These high probabilities
despite the absence of the mutation argues for establishing simple and
efficient methods for genetic diagnosis that can also be used in
populations without FH-founder
mutations.2 3 4 5 The
DGGE-based methodology described could be a candidate, because
preliminary results indicate that DGGE allows screening of the LDLR
gene exons in an index patient within 24 hours without much effort;
sequencing of a possible mutation-bearing exon in family members can
then be performed. Final evaluation of the DGGE approach described
must, however, await the results of ongoing studies evaluating the
sensitivity of the method to detect mutations after all 18 exons of the
LDLR gene are examined.
Presently, the therapeutic consequences of differentiating between the
different causes of hypercholesterolemia are limited. However, the
first reports comparing the results of medical treatment of different
LDLR gene mutations indicate that knowledge of the underlying mutations
may be a tool allowing better predictions of clinical response to
treatment.34 35 Likewise, different mutations are
known to
be associated with different prognosis with respect to cardiovascular
disease.1 11 Studies like the present one that give
detailed descriptions of the phenotypic presentation of the
different LDLR mutations are therefore needed so we can create a
framework from which knowledge of the underlying mutation in FH
families can be used to improve prognostic and therapeutic evaluation.
Until these data become available, the ability to make an unambiguous
diagnosis of FH carrier status in FH families is highly relevant
because it allows both tailoring of early interventions in young FH
carriers and alleviates the psychological stress of uncertainty about
carrier status in members of FH families.
 |
Acknowledgments
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This study was supported by grants from The Danish Heart
Foundation.
Received July 18, 1994;
revision received October 5, 1994;
accepted October 24, 1994.
 |
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