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(Circulation. 2003;108:1432.)
© 2003 American Heart Association, Inc.
Clinical Investigation and Reports |
From the Donald W. Reynolds Cardiovascular Research Center (M.M.C., E.A.A., A.D., R.T., B.F., E.Y., J.Y.K., M.F., R.R., F.L.J., P.S.T., T.Q.), Division of Cardiovascular Medicine, Falk CVRC, Stanford University, Stanford, Calif; Agilent Technologies (D.X.F.D., A.T., A.B.-D., L.B., Z.Y.), Palo Alto, Calif; and Division of Cardiovascular and Medical Sciences (T.M., H.D.), University of Glasgow, Scotland.
Correspondence to Thomas Quertermous, Donald W. Reynolds Cardiovascular Research Center, Division of Cardiovascular Medicine, Falk CVRC, Stanford University, 300 Pasteur Dr, Stanford, CA 94305. E-mail tomq1{at}stanford.edu
Received July 10, 2003; revision received August 1, 2003; accepted August 4, 2003.
| Abstract |
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Methods and Results We performed transcriptional profiling using a spotted cDNA microarray with 12 814 unique clones on paired samples of left ventricle obtained before and after placement of a left ventricular assist device in 11 patients. The significance analysis of microarrays and a novel rank consistency score designed to exploit the paired structure of the data confirmed that natriuretic peptides were among the most significantly downregulated genes after offloading. The most significantly upregulated gene was the G-proteincoupled receptor APJ, the specific receptor for apelin. We demonstrate here using immunoassay and immunohistochemical techniques that apelin is localized primarily in the endothelium of the coronary arteries and is found at a higher concentration in cardiac tissue after mechanical offloading. These findings imply an important paracrine signaling pathway in the heart. We additionally extend the clinical significance of this work by reporting for the first time circulating human apelin levels and demonstrating increases in the plasma level of apelin in patients with left ventricular dysfunction.
Conclusions The apelin-APJ signaling pathway emerges as an important novel mediator of cardiovascular control.
Key Words: natriuretic peptides heart failure vasculature
| Introduction |
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The APJ receptor (alternatively known as angiotensin receptor-like 1) is 1 of a family of 7-transmembrane domain receptors first cloned in 1993.9 Although "orphan" for many years, the endogenous ligand was recently isolated and named apelin.10 Apelin and APJ are widely expressed in homogenates from rat and mouse organs in a pattern shared with angiotensinogen and the angiotensin receptor AT1, respectively.11 However, angiotensin II does not bind to APJ. In addition, whereas angiotensin is known to be a significant vasopressor, apelin reduces blood pressure via a nitric oxidedependent, possibly central mechanism.12,13 Apelin is also thought to be involved in fluid balance. Finally, apelin was recently found to exert a stronger positive inotropic effect on a molar basis (EC50 33 pmol/L) than any agent yet described.14
In this report of large-scale changes in gene expression after LVAD, we confirm the pathophysiologic importance of natriuretic peptides and uncover roles for many novel genes, including the G-proteincoupled receptor APJ. We demonstrate an increase in expression levels of APJ after mechanical offloading in heart failure and changes in both tissue and plasma levels of the APJ cognate ligand apelin. Localization of apelin to the vasculature in normal heart suggests a novel paracrine signaling pathway in the cardiovascular system.
| Methods |
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Implantation of Left Ventricular Assist Device
The Novacor Left Ventricular Assist System (World Heart Corporation) was implanted, providing a left ventricular apical core (pre-LVAD). Left ventricular postimplantation tissue was obtained at cardiectomy. Normal left ventricular tissue was derived from a patient with no history of coronary disease or cardiomyopathy.
RNA Isolation and Hybridization
RNA isolation and hybridization were performed as previously described.15 Common reference RNA was Universal Pooled Human Reference RNA (Stratagene). Samples were hybridized to the Agilent Human 1 Catalog Array. A total of 44 hybridizations were performed on 11 pairs of pre- and post-LVAD RNA samples. Replicate hybridizations were performed as dye swaps.
Scanning, Background Subtraction, and Normalization of Microarray Data
Microarrays were scanned on an Agilent G2565AA Microarray Scanner System. Images were quantified using Agilent Feature Extraction Software (version A.6.1.1). Processing included local background subtraction and a rank consistency-based probe selection filter. Normalization was carried out using a LOWESS algorithm. Dye-normalized signals of Cy3 and Cy5 channels were used in calculating log ratios. Ratios were averaged for each dye swap using the arithmetic mean.
Significance Analysis of Microarrays
This algorithm has been described previously.15 Heat maps were generated with software written by the authors (see the Software link, reference 16).16
Rank Consistency Score
For each patient k, we calculated for every gene g the difference between averaged post-LVAD and averaged pre-LVAD expression levels. These differences are ranked within each patient in descending order. The rank of the gene g in patient k is denoted Rg,k. For every gene g, the rank consistency score Sg,n is the normalized maximal (ie, the worst) rank of this gene among all patients, Sg,n=max1
k
nRg,k/N, where N is the total number of genes. Thus, a gene has a rank consistency score (RCoS) of s if and only if it ranks better than s in all n patients. Similarly, we can also compute the rank consistency score Sg,m for m out of n patients. In this case, for each patient we rank genes as before. For each gene, we order its ranks, and then the score Sg,m corresponds to the m-th best rank, as follows: Sg,m=m-th smallest Rg,k/N, 1
k
n.
To determine the statistical significance of this score, we compute P values for all score levels, s. This is done under the null model of uniform and independent rank vectors. Therefore, for the m out of n RCoS, P value(s) =
m
i
n(ni)si(1-s)(n-i).
Using these P values, we estimate false discovery and binomial surprise rates, comparing the observed number of genes with score s or better to the expected number of genes with such scores.17,18
Hierarchical Clustering
Unsupervised, average-linkage, hierarchical clustering was performed using Cluster software and displayed with Treeview software.19
Quantitative Real-Time Reverse TranscriptasePolymerase Chain Reaction
Five genes were assessed in 7 individuals. After DNase treatment, cDNA was synthesized from 5 µg of RNA using MMLV reverse transcriptase (SuperScript II kit, Invitrogen). Amplification was carried out in triplicate at 50°C for 2 minutes and 95°C for 10 minutes followed by 40 cycles of 95°C for 15 seconds and 60°C for 1 minute. RNA quantity was expressed relative to 18S endogenous control. Fold differences were calculated by dividing the post-LVAD sample by the pre-LVAD sample. Linear regression was carried out using SPSS version 11.0.
Apelin Assay
Eight milligrams of tissue was boiled in 0.1 mol/L acetic acid for 10 minutes, homogenized, and then centrifuged at 12 000 rpm for 10 minutes, and the supernatant was used to quantify total protein concentration via the Bradford Assay (BioRad). Equal amounts of total protein (concentration 300 µg/mL) were used in the Apelin-12 EIA assay kit (Phoenix Pharmaceuticals) following manufacturers instructions. Plasma 50 µL was used directly for the assay. Comparisons were made using Students paired t test (tissue apelin levels) and one-way ANOVA with post hoc tests according to Fisher (plasma apelin levels) (SPSS software version 11.0).
Immmunohistochemistry
Tissue was frozen in OCT (Tissue-Tek). Four-micron-thick sections were fixed in -20°C acetone and air-dried. Blocking was achieved using 10% goat serum (Zymed, South San Francisco, Calif). Sections were stained with apelin polyclonal antibody (Phoenix Pharmaceuticals, Belmont, Calif) and with CD31 (Cymbus Biotechnology Ltd, England). Secondary incubation used anti-rabbit envision + (DAKO, Carpenteria, Calif) for apelin and anti-mouse envision + (DAKO) for CD31. The chromogenic substrate 3-amino-9-ethylcarbazole was used. Sections were counterstained using hematoxylin.
| Results |
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Novel Candidate Genes Emerge From Microarray Analysis
The list of genes differentially regulated from pre- to post-LVAD contains genes previously unrecognized to be important in heart failure. Mitogen-activated protein kinase 4 (MAPK-4, Hs.269222, also called ERK3, ERK4, and p63MAPK) is a distantly related member of the MAPK family of serine/threonine kinases. It was highly and consistently downregulated after LVAD and ranked ahead of all other genes by SAM (Figure 1A) and 10th by the RCoS method (Table 2). SAM ranks genes by a t statistic, which emphasizes overall pre- to post-differences per gene as a function of variance, controlling the error rate by a permutation procedure.15 In contrast, the rank consistency score more directly rewards consistency of change for a given gene across many individuals, offsetting the effect of individual variation.
Downregulation of a splice variant of the regulatory domain (
subunit) of the L-type calcium channel after offloading (AF233289, ranked 3rd by SAM) may be important given that changes in calcium dynamics are a central component of heart failure pathogenesis. Although the role of the myosin light chain kinase pseudogene (AF042089, 6th in rank consistency) remains unknown, myosin light chain kinase itself is a key mediator of sarcomeric organization in cardiac hypertrophy, making the presence of this related gene intriguing.20 Myosin light chain 2a (W17098, 5th in rank consistency) is a highly conserved and early marker of atrial chamber differentiation in organogenesis but is found here in the ventricle, suggesting a possible novel role in left ventricular hypertrophy and failure.
Several immunological markers, such as interleukins, interferons, tumor necrosis factorrelated genes, and major histocompatibility complex genes, are upregulated after LVAD. Hierarchical average-linkage clustering (Figure 1B) groups these genes together, suggesting a coordinated immune response to the implantation of a prosthesis in the thorax.
Gene Expression Does Not Predict Diagnostic Classification of Heart Failure
Although some studies have compared gene expression in heart failure among different diagnostic categories, others contend there is a final common pathway regardless of initiating etiology.2,3,21 Hierarchical clustering of the entire data set lends limited support to this latter argument as patients do not cluster by diagnostic category (see reference 16).16 In addition, no genes were significantly differentially upregulated between diagnostic groups (SAM). Exclusion of 1 patient with hypertrophic cardiomyopathy and 1 with giant cell cardiomyopathy changed neither of these findings.
Expression of the APJ Receptor Is Markedly Elevated After LVAD
Two distinct statistical analyses identified APJ (Hs.9305) as the gene most significantly and consistently upregulated after LVAD implantation (Figure 1A, Table 2). The SAM score (4.872) was greater than all others, whereas pre- to post-LVAD fold change was estimated by hybridization at 3.2 and by quantitative real-time polymerase chain reaction (PCR) at 4.12. These relatively conservative fold changes contrast with the magnitude of the SAM score and emphasize the importance of variance in the analysis of microarray data. The number of significantly upregulated genes in this data set with fold changes less than 2 argues against the common practice of filtering on this criterion.
Quantitative Real-Time PCR Confirms the Accuracy of Microarray Hybridization Studies
Although use of a reference RNA controls much of the variation introduced by the dynamics of hybridization, the gold standard for quantitation of mRNA remains quantitative real-time (qRT) PCR (Taqman). We carried out qRT-PCR for 5 of the most differentially regulated genes in both samples of 7 individuals for whom sufficient RNA was available (Table 1) and expressed results as the ratio of post-LVAD to pre-LVAD for each individual and gene. The 5 genes were APJ, interleukin 6, MAPK4, atrial natriuretic peptide, and brain natriuretic peptide. We found a close relationship between the magnitude of change as measured by hybridization and qRT-PCR (Figure 1C; y=0.49x, R2=0.86, P<0.0001), confirming previous authors observations and suggesting that ratiometric hybridization accurately reflects gene expression across the array.22
Apelin Is Increased in Cardiac Tissue After LVAD Implantation
We used competitive enzyme immunoassay to detect levels of the APJ ligand apelin in the samples of left ventricle that were used for hybridization. Tissue apelin levels were significantly higher after LVAD (Figure 2A; pre, 0.967±0.26; post, 2.246±0.41 ng/mL; P<0.001; units are concentration of apelin in nanogram per milliliter within a normalized total protein concentration of 300 µg/mL). This reflects a change in the upward direction in all but 2 patients. Because the expression of the receptor and its ligand were moving in concert, we examined the relationship between the 2 per individual. We found a weak but significant positive correlation (y=-0.42+1.15x; R2=0.3; P=0.019; data not shown).
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Apelin Is Highly Specifically Localized to the Vasculature in Cardiac Tissue
We carried out immunohistochemistry with the same antibody used for detecting apelin tissue levels by enzyme immunoassay. We compared the localization of apelin in normal human left ventricle with that from end stage, failing left ventricle. In both tissues, the distribution of staining was similar. We found that cardiac vessels stain densely for apelin with negligible staining in myocardial cells (Figure 2B). Staining of consecutive sections for platelet-endothelial cell adhesion molecule (CD31) confirmed the endothelial localization, although high-power views suggested apelin staining extended to smooth muscle cells also. Despite little staining overall of the myocardium, in the failing heart, apelin was detectable at low levels in the myocardial cells also, suggesting extension of the signaling system in late-stage disease (data not shown).
Human Plasma Levels of Apelin Rise in Early Heart Failure and Fall in Severe Disease
To determine the role of apelin in earlier stages of heart failure, we measured plasma levels of apelin in blood from 80 heart failure patients with a broad spectrum of disease severity (male, n=63; female, n=17; mean age, 63 years; SD, 10 years). Because plasma apelin levels had not previously been reported in humans, we recruited 32 healthy subjects to determine the range of normal. We found that plasma apelin was detectable in plasma from healthy human subjects (3.58±0.33 ng/mL), rose in the early stages of heart failure (NYHA class 1, 4.94±0.85 ng/mL), and was maximum in those classified as NYHA class 2 (6.22±0.63, P<0.02). In those with severe disease, plasma apelin was lower (NYHA class 3 to 4, 4.58±0.62 ng/mL), but this change was not significant (Figure 3A). Mirroring the changes in functional class, dividing the patients by ejection fraction also revealed a rise in apelin from normal to mild-to-moderate left ventricular dysfunction (3.98±0.34 versus 6.02±0.72 ng/mL, P<0.02). Similarly, in later-stage disease, apelin level declined (severe left ventricular dysfunction, 4.11±0.58 ng/mL; P<0.02, Figure 3B).
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| Discussion |
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After ventricular offloading, tissue levels of apelin protein and APJ message increase. Furthermore, although plasma levels of apelin rise in early heart failure, they fall in late disease. Szokodi et al14 infused apelin into isolated perfused rat hearts and demonstrated dose-dependent positive inotropy with preload-induced augmentation of the maximal rate of rise of left ventricular pressure. As such, it seems likely that along with other classical inotropic G-proteincoupled signaling pathways, the apelin-APJ system is recruited to support the contractility of the failing heart in mild-to-moderate left ventricular dysfunction. However, Tatemoto et al12 showed that administration of apelin peptides to anesthetized rats resulted in reductions in blood pressure of up to 26 mm Hg. This unusual combination of inotropy and afterload reduction suggests the apelin-APJ pathway as a therapeutic target in acute decompensated heart failure. In this situation, goals of therapy include diuresis, reduction of systemic vascular resistance, and support of contractility. We show here that not only is the apelin-APJ signaling pathway capable of inotropy and peripheral resistance reduction but that it is endogenously downregulated in severe disease. The idea that restoring levels of apelin in such patients could improve outcome remains to be tested. However, we hypothesize potential benefit from the exogenous administration of apelin in severe left ventricular failure, an idea supported by the increases in tissue protein levels of apelin and expression levels of the APJ receptor after LVAD demonstrated here.
Two recent studies using short oligonucleotide arrays have also assessed changes in gene expression after LVAD implantation.5,6 One study included 3 ischemic and 3 nonischemic cardiomyopathy patients and in contrast to our study found distinct gene expression differences between the 2 diagnostic categories.6 In a second study, an analysis of 7 patients with idiopathic dilated cardiomyopathy found a considerably different group of genes to be differentially regulated.5 In striking contrast to our findings, this second group found the APJ receptor to be downregulated by 3-fold and a generalized decrease in inflammatory gene signature after LVAD. The significant differences between these 3 array studies and the lack of correlation in some cases with previous studies at the individual gene level highlight the need to consider carefully the clinical features of the patients studied and to pursue at the biological level specific gene expression correlations.
| Acknowledgments |
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| Footnotes |
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This article originally appeared Online on September 8, 2003 (Circulation. 2003;108:r65r72).
Drs D.X. Deng, Tsalenko, Bruhn, Ben-Dor, and Yakhini work for and own equity in Agilent Technologies, Inc, the company that supplied the DNA microarray for this study.
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R. R. van Kimmenade, J. L. Januzzi Jr, P. T. Ellinor, U. C. Sharma, J. A. Bakker, A. F. Low, A. Martinez, H. J. Crijns, C. A. MacRae, P. P. Menheere, et al. Utility of Amino-Terminal Pro-Brain Natriuretic Peptide, Galectin-3, and Apelin for the Evaluation of Patients With Acute Heart Failure J. Am. Coll. Cardiol., September 19, 2006; 48(6): 1217 - 1224. [Abstract] [Full Text] [PDF] |
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K. S. Chong, R. S. Gardner, J. J. Morton, E. A. Ashley, and T. A. McDonagh Plasma concentrations of the novel peptide apelin are decreased in patients with chronic heart failure Eur J Heart Fail, June 1, 2006; 8(4): 355 - 360. [Abstract] [Full Text] [PDF] |
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R. Tabibiazar, R. A. Wagner, A. Deng, P. S. Tsao, and T. Quertermous Proteomic profiles of serum inflammatory markers accurately predict atherosclerosis in mice Physiol Genomics, April 13, 2006; 25(2): 194 - 202. [Abstract] [Full Text] [PDF] |
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P. T. Ellinor, A. F. Low, and C. A. MacRae Reduced apelin levels in lone atrial fibrillation Eur. Heart J., January 2, 2006; 27(2): 222 - 226. [Abstract] [Full Text] [PDF] |
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A. M. Levy, O. Gilad, L. Xia, Y. Izumiya, J. Choi, A. Tsalenko, Z. Yakhini, R. Witter, L. Lee, C. J. Cardona, et al. Marek's disease virus Meq transforms chicken cells via the v-Jun transcriptional cascade: A converging transforming pathway for avian oncoviruses PNAS, October 11, 2005; 102(41): 14831 - 14836. [Abstract] [Full Text] [PDF] |
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M. M. Kittleson, K. M. Minhas, R. A. Irizarry, S. Q. Ye, G. Edness, E. Breton, J. V. Conte, G. Tomaselli, J. G. N. Garcia, and J. M. Hare Gene expression analysis of ischemic and nonischemic cardiomyopathy: shared and distinct genes in the development of heart failure Physiol Genomics, May 11, 2005; 21(3): 299 - 307. [Abstract] [Full Text] [PDF] |
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J. Boucher, B. Masri, D. Daviaud, S. Gesta, C. Guigne, A. Mazzucotelli, I. Castan-Laurell, I. Tack, B. Knibiehler, C. Carpene, et al. Apelin, a Newly Identified Adipokine Up-Regulated by Insulin and Obesity Endocrinology, April 1, 2005; 146(4): 1764 - 1771. [Abstract] [Full Text] [PDF] |
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J.-C. Zhong, D.-Y. Huang, G.-F. Liu, H.-Y. Jin, Y.-M. Yang, Y.-F. Li, X.-H. Song, and K. Du Effects of all-trans retinoic acid on orphan receptor APJ signaling in spontaneously hypertensive rats Cardiovasc Res, February 15, 2005; 65(3): 743 - 750. [Abstract] [Full Text] [PDF] |
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D. A. Iacobas, S. Iacobas, W. E. I. Li, G. Zoidl, R. Dermietzel, and D. C. Spray Genes controlling multiple functional pathways are transcriptionally regulated in connexin43 null mouse heart Physiol Genomics, February 10, 2005; 20(3): 211 - 223. [Abstract] [Full Text] [PDF] |
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R. Tabibiazar, R. A. Wagner, J. M. Spin, E. A. Ashley, B. Narasimhan, E. M. Rubin, B. Efron, P. S. Tsao, R. Tibshirani, and T. Quertermous Mouse Strain-Specific Differences in Vascular Wall Gene Expression and Their Relationship to Vascular Disease Arterioscler Thromb Vasc Biol, February 1, 2005; 25(2): 302 - 308. [Abstract] [Full Text] [PDF] |
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D. K. Lee, V. R. Saldivia, T. Nguyen, R. Cheng, S. R. George, and B. F. O'Dowd Modification of the Terminal Residue of Apelin-13 Antagonizes Its Hypotensive Action Endocrinology, January 1, 2005; 146(1): 231 - 236. [Abstract] [Full Text] [PDF] |
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E. A. Ashley, J. Powers, M. Chen, R. Kundu, T. Finsterbach, A. Caffarelli, A. Deng, J. Eichhorn, R. Mahajan, R. Agrawal, et al. The endogenous peptide apelin potently improves cardiac contractility and reduces cardiac loading in vivo Cardiovasc Res, January 1, 2005; 65(1): 73 - 82. [Abstract] [Full Text] [PDF] |
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M. M. Kittleson, S. Q. Ye, R. A. Irizarry, K. M. Minhas, G. Edness, J. V. Conte, G. Parmigiani, L. W. Miller, Y. Chen, J. L. Hall, et al. Identification of a Gene Expression Profile That Differentiates Between Ischemic and Nonischemic Cardiomyopathy Circulation, November 30, 2004; 110(22): 3444 - 3451. [Abstract] [Full Text] [PDF] |
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M. F. Berry, T. J. Pirolli, V. Jayasankar, J. Burdick, K. J. Morine, T. J. Gardner, and Y. J. Woo Apelin Has In Vivo Inotropic Effects on Normal and Failing Hearts Circulation, September 14, 2004; 110(11_suppl_1): II-187 - II-193. [Abstract] [Full Text] [PDF] |
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J. Ishida, T. Hashimoto, Y. Hashimoto, S. Nishiwaki, T. Iguchi, S. Harada, T. Sugaya, H. Matsuzaki, R. Yamamoto, N. Shiota, et al. Regulatory Roles for APJ, a Seven-transmembrane Receptor Related to Angiotensin-type 1 Receptor in Blood Pressure in Vivo J. Biol. Chem., June 18, 2004; 279(25): 26274 - 26279. [Abstract] [Full Text] [PDF] |
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J. L. Hall, S. Grindle, X. Han, D. Fermin, S. Park, Y. Chen, R. J. Bache, A. Mariash, Z. Guan, S. Ormaza, et al. Genomic profiling of the human heart before and after mechanical support with a ventricular assist device reveals alterations in vascular signaling networks Physiol Genomics, May 19, 2004; 17(3): 283 - 291. [Abstract] [Full Text] [PDF] |
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